NCPI FHIR Implementation Guide
0.1.0 - ci-build
NCPI FHIR Implementation Guide - Local Development build (v0.1.0). See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes | Version: 0.1.0 | |||
| Active as of 2019-08-21 | Computable Name: ToBeDeterminedCodes | |||
This value set includes all TBD Codes
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes
This value set contains 18 concepts
Expansion based on ToBeDeterminedCodes ('TbdCodes') v0.1.0 (CodeSystem)
All codes in this table are from the system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes
| Code | Display | Definition |
| grouper | grouper | A means to bundle several observations such as one would find in a genetics test panel. |
| mode-of-inheritance | mode-of-inheritance | This is actually LOINC code 79742-3. And the IG will be updated |
| effect-transporter-function | effect-transporter-function | Predicted phenotype for drug efficacy through transport mechanism. A single marker interpretation value known to increase or decrease the drug's performance. |
| effect-medication-efficacy | Medication Efficacy | |
| effect-medication-metabolism | Medication Metabolism | |
| effect-medication-transporter | Medication Transporter Function | |
| effect-high-risk-allele | High Risk Allele | |
| prognostic-implication | Prognostic Implication component | Finding of whether a particular somatic genotype/haplotype/variation or combination-thereof predicts a particular outcome for the specified cancer - either on its own or in conjunction with one or more interventions. |
| associated-cancer | associated-cancer | |
| associated-therapy | Genomically linked therapy | The non-medication therapy (procedure) associated with this implication. |
| region-coverage | region-coverage | Given as a number between 0 and 100. Mean mapped read depth. Obtained by counting total number of mapped reads and divided by the number of bases in the region sequence. |
| functional-annotation | functional-annotation | Annotated changes to sequence features caused by this variant. Terms are from the sequence ontology under SO:0001537. |
| exact-start-end | Variant exact start and end | The genomic coordinates of the exact genomic range in which the variant resides. |
| inner-start-end | Variant inner start and end | The genomic coordinates of the inner genomic range in which the variant might reside. |
| outer-start-end | Variant outer start and end | The genomic coordinates of the outer genomic range in which the variant might reside. |
| variant-inheritance | Variant inheritance | A quality inhering in a variant by virtue of its origin. The terms are in the sequence ontology under SO:0001762. |
| diagnostic-implication | Diagnostic Implication | An observation linking a genomic finding with a knowledge base, providing context that may aid in diagnosing a patient with a particular phenotype or condition. |
| therapeutic-implication | Therapeutic Implication | An observation linking a genomic finding with a knowledge base, providing potential evidence of an interaction with a specified medication or non-medicinal therapy. |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |